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Resource ValueSet/FHIR Server from package hl7.fhir.uv.genomics-reporting#current (46 ms)

Package hl7.fhir.uv.genomics-reporting
Type ValueSet
Id Id
FHIR Version R4
Source http://hl7.org/fhir/uv/genomics-reporting/https://build.fhir.org/ig/HL7/genomics-reporting/ValueSet-hgnc-vs.html
Url http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs
Version 3.0.0
Status active
Date 2024-12-12T20:13:16+00:00
Name HGNCVS
Title HUGO Gene Nomenclature Committee Gene Names (HGNC)
Experimental False
Realm uv
Authority hl7
Description This value set includes all HGNC Codes, which includes multiple code systems. In this guide, Gene IDs from HGNC are used as CodeableConcepts, which must be sent with the HGNC gene ID including the prefix 'HGNC:' as the code and the HGNC 'gene symbol' as display. CAUTION: HGNC also indexes gene groups by numeric ID (without a prefix), and older systems may send HGNC gene IDs without the prefix, so care must be taken to confirm alignment. We have separately included the genegroup code system to draw attention to this ambiguity and potential error.

Resources that use this resource

StructureDefinition
finding Genomic Finding
genomic-study-analysis-regions Genomic Study Analysis Regions
molecular-biomarker Molecular Biomarker
https://www.medizininformatik-initiative.de/fhir/ext/modul-molgen/StructureDefinition/variante MII PR MolGen Variante

Resources that this resource uses

CodeSystem
http://www.genenames.org/genegroup HUGO Gene Nomenclature Committee Gene Group
http://www.genenames.org HUGO Gene Nomenclature Committee Genes


Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: ValueSet hgnc-vs

This value set includes codes based on the following rules:


Source

{
  "resourceType" : "ValueSet",
  "id" : "hgnc-vs",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet hgnc-vs</b></p><a name=\"hgnc-vs\"> </a><a name=\"hchgnc-vs\"> </a><a name=\"hgnc-vs-en-US\"> </a><p>This value set includes codes based on the following rules:</p><ul><li>Include all codes defined in <a href=\"http://www.genenames.org\"><code>http://www.genenames.org</code></a></li><li>Include all codes defined in <a href=\"http://terminology.hl7.org/6.1.0/CodeSystem-HGNCGeneGroup.html\"><code>http://www.genenames.org/genegroup</code></a></li></ul></div>"
  },
  "extension" : [
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
      "valueCode" : "cg"
    }
  ],
  "url" : "http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs",
  "version" : "3.0.0",
  "name" : "HGNCVS",
  "title" : "HUGO Gene Nomenclature Committee Gene Names (HGNC)",
  "status" : "active",
  "experimental" : false,
  "date" : "2024-12-12T20:13:16+00:00",
  "publisher" : "HL7 International / Clinical Genomics",
  "contact" : [
    {
      "name" : "HL7 International / Clinical Genomics",
      "telecom" : [
        {
          "system" : "url",
          "value" : "http://www.hl7.org/Special/committees/clingenomics"
        },
        {
          "system" : "email",
          "value" : "cg@lists.HL7.org"
        }
      ]
    }
  ],
  "description" : "This value set includes all HGNC Codes, which includes multiple code systems. In this guide, Gene IDs from HGNC are used as CodeableConcepts, which must be sent with the HGNC gene ID including the prefix 'HGNC:' as the code and the HGNC 'gene symbol' as display. CAUTION: HGNC also indexes gene groups by numeric ID (without a prefix), and older systems may send HGNC gene IDs without the prefix, so care must be taken to confirm alignment. We have separately included the genegroup code system to draw attention to this ambiguity and potential error.",
  "jurisdiction" : [
    {
      "coding" : [
        {
          "system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
          "code" : "001",
          "display" : "World"
        }
      ]
    }
  ],
  "compose" : {
    "include" : [
      {
        "system" : "http://www.genenames.org"
      },
      {
        "system" : "http://www.genenames.org/genegroup"
      }
    ]
  }
}

XIG built as of ??metadata-date??. Found ??metadata-resources?? resources in ??metadata-packages?? packages.